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- Presentation
Prognostic Gene Expression Profiling and Sentinel Lymph Node Risk Prediction in Melanoma
Description
The speaker reviews prognostic and predictive gene expression profiling (GEP) in melanoma, focusing on three commercial tests: Castle Biosciences’ 31-GEP (DecisionDx), the Merlin test, and the Meligenics 11-GEP. Conventional AJCC staging already predicts outcomes reasonably well, but it misses some patients, especially among early-stage melanomas and in sentinel lymph node (SLN) assessment, where many biopsies are negative and some negative patients still recur. GEP tests use RNA from primary tumor tissue to classify tumors as low- or high-risk and may help estimate recurrence risk, SLN positivity, and potentially guide imaging, biopsy decisions, and adjuvant therapy. The 31-GEP is widely used and has been studied for prognostic and SLN prediction, with some studies showing management changes after results are shared, but the speaker emphasizes that changes in decision-making are not the same as proven clinical utility because prospective trials showing improved outcomes are lacking. Merlin, developed in the Netherlands, also predicts SLN positivity and has some prognostic data, with a large study showing a 93% negative predictive value, though this is still not the <5% threshold hoped for. Meligenics is less studied but is being tested in a prospective trial in Europe. The talk also reviews free SLN nomograms from MSK and the Melanoma Institute of Australia, which may perform as well as or better than some molecular tests. Current guidelines do not recommend GEP testing to guide management in T1A lesions or to replace surgical oncology consultation, and the field still needs randomized, head-to-head studies to determine whether these expensive tests truly improve outcomes and which patients, if any, should be tested.
View moreConclusions
- Gene expression profiling in melanoma is promising for refining recurrence and sentinel lymph node risk, but current evidence does not show that it improves patient outcomes beyond standard staging or nomogram-based tools.
- The 31-GEP, 11-GEP, and CP-GEP tests can stratify patients into different risk groups, yet their real-world value remains uncertain because management changes based on test results have not been proven to produce better clinical outcomes.
- For T1A melanoma, GEP testing is generally not recommended because the baseline risk of metastasis is low and false reassurance or false positives could lead to inappropriate management changes.
- Predictive performance for sentinel lymph node positivity is reasonably good for some GEP-based approaches, but free clinical-pathologic nomograms appear to perform similarly in many studies and may be more cost-effective.
- The MERLIN/CP-GEP data suggest a low-risk group with a relatively low rate of sentinel node positivity, but the threshold has not been low enough to clearly replace standard clinical decision-making.
- The main unresolved question is not whether GEP tests can generate risk scores, but whether those scores should change treatment, surveillance, or biopsy decisions in ways that truly improve outcomes.
- Prospective randomized trials and head-to-head comparisons across tests and against nomograms are needed before routine widespread use can be justified.
- At present, GEP testing may be useful in selected cases, but its clinical utility, optimal patient population, and value relative to cost remain unproven.
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